| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2677 |
| Davao Gulf | Sea/Bay/Gulf | native | 45419 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 2677 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 48445 |
| Indian Ocean | Sea/Bay/Gulf | native | 9823 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8631 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2677 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2677 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2677 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2677 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45334 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 45419 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47588 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Yellow Sea | Sea/Bay/Gulf | native | 2677 |