| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 45255 |
| Arabian Sea | Sea/Bay/Gulf | native | 4537 |
| Bay of Bengal | Sea/Bay/Gulf | native | 45255 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Indian Ocean | Sea/Bay/Gulf | native | 3424 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3424 |
| Manila Bay | Sea/Bay/Gulf | native | 30919 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5978 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45674 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Visayan Sea | Sea/Bay/Gulf | native | 3557 |